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GET IT NOWMy Healthy Apple Crisp Has No Flour, But All The Crunch

My kids said this healthy apple crisp is the best dessert I’ve ever made, which is so funny because it’s actually one of the easiest and not even that sweet. But it does have their favorite oats and lets the natural sweetness of apples shine in the best way, so I definitely get where they’re coming from. And while this is the kind of treat that tastes familiar, here’s why mine is a little different… and why that’s a great thing:
- Cozy fall flavors – With tender apples, warm cinnamon and maple, and a lightly crunchy, buttery oat topping, this is everything I want in a healthy dessert for fall. It’s warm, comforting, and makes my whole kitchen smell amazing while it bakes!
- No flour of any kind – Unlike most apple crisp recipes I’ve seen, mine has zero flour. Instead, I chop half of the pecans super fine to make a nut flour without having to buy any specialty ingredients. If you use GF oats, this healthy dessert is naturally gluten-free!
- Naturally sweetened, with no refined sugar – Maple syrup has cozier vibes, anyway! Especially my zero sugar maple syrup ;)… which makes this treat come in at just 9 grams of sugar per serving, all from the apples. And you can’t tell at all.
I first threw together this healthy apple crisp recipe on a whim last year, after I used the same crisp topping with other fruit (which you can totally do). I liked this pecan oat mixture so much that I immediately used it on apples.
Now that it’s apple season again, it was the perfect time to share this fall treat with you. Make it with me, and save it for the holidays, too!


Ingredients & Substitutions
Here I explain the best ingredients for my healthy apple crisp with oats, what each one does, and substitution options. For measurements, see the recipe card.
- Apples – I used Honeycrisp apples, which have just the right sweetness and hold their shape beautifully when baked. (It also gives me all the nostalgic vibes, as it’s my hometown state fruit, from Minnesota!) I recommend stocking up so you can also make my gluten free apple pie and chicken apple salad this season! For other options:
- You can use other firm apples: Granny Smith, Fuji, Pink Lady, or Braeburn work well, if you want more tartness or variety.
- Avoid softer apples: I don’t recommend Gala, Red Delicious, McIntosh, or Golden Delicious, because they break down too much and release extra water.
- Rolled Oats – I don’t recommend quick oats (too mushy) or steel cut oats (too chewy).
- Pecans – I chop half in bigger pieces for crunch, and half super fine (total powder) to make this healthy apple crisp recipe without flour. You can also do this with other nuts, like walnuts or almonds. For a nut-free option, substitute pumpkin seeds or sunflower seeds instead. Or if you want less work, grab pre-chopped nuts for the coarse part and replace the finely chopped powder with my Wholesome Yum Almond Flour. (P.S. If you’ve got extra pecans, make my pecan pie bars, too!)
- Maple Syrup – Unlike most recipes that use sugar, I sweeten this healthy apple crisp with my Wholesome Yum Zero Sugar Maple Syrup. It’s natural and tastes like a dupe of the Kirkland Grade A one I modeled it after! You definitely need it in the filling, but see my tips to decide if you should add it to the topping.
- Unsalted Butter – For flavor, moisture, and browning. I’ve also tested a dairy-free version with butter-flavored coconut oil instead, which turned out great.
- Lemon Juice – Brings out the sweetness and helps the apples keep a nice color. Feel free to use bottled here, as I don’t find it makes much difference.
- Seasoning – I keep it simple with cinnamon and salt. If you want extra flavor, you can add other spices (like nutmeg or cardamom), or a splash of vanilla extract to the apples. Or crumble a little brown sugar into the topping. I do better-for-you Besti Brown sweetener when I want this option!

How To Make Healthy Apple Crisp
I have step-by-step photos here to help you visualize the recipe. For full instructions with amounts and temperatures, see the recipe card.
- Peel and slice the apples. I’m obsessed with this peeler and this corer + slicer lately. The peeler feels much more ergonomic (and sharper) than my last one. The slicer has more sections than others I’ve tried, and a little insert at the bottom to pop the slices out on top, so they don’t get stuck.
- Mix the filling. In a large bowl, stir the apples with the maple syrup and lemon juice. Spread the apple mixture into a greased baking dish. I use this one, which is the perfect size and has a lid that I use to easily store leftovers later!


- Chop the pecans. I do half coarsely chopped and half as a fine powder, almost like a coarse meal or flour. See my picture below for a visual!
- Mix the topping. In another large bowl, stir together the oats, chopped pecans (both coarse and fine), cinnamon, and salt. Add the butter (or coconut oil), and mix until crumbly. I use my hands for this part, but a pastry cutter works great if you have one. Stir in a little maple syrup if you’re using it in the topping — see my notes on this in my tips below.


- Bake the healthy apple crisp. Sprinkle the crumble topping evenly over the apples, making sure to cover them well. Pop the pan in the oven, and bake until the apples are tender and the topping looks golden.



My Tips For Texture & Sweetness
- Don’t cut the apple wedges too thick or too thin. This will affect the baking time and final texture. I usually do 16 pieces per large apple, which is how my slicer cuts. You can also dice them into 1/2-inch cubes, which will cook a little faster.
- Do I need to peel the apples for apple crisp? No, you don’t have to. In fact, I love this healthy apple crisp with the skins on (extra nutrients, too). But, I peeled them this time because I felt like most of my readers will expect them peeled. Feel free to leave the peel on if you like!
- This entire healthy dessert is mildly sweet, but not super sweet. Feel free to add more syrup if you want more sweetness – it’s pretty forgiving and will still come together.
- The topping doesn’t need maple syrup if you serve this healthy apple crisp with ice cream or frozen yogurt. And I highly recommend doing so! I found that the syrup addition tasted better when I served it on its own, though. It’s up to you if you want a little sweetness in the topping or just the apples!
- If the apples are soft but the top isn’t golden, you can broil at the end. Just pop the pan under the broiler for about 2 minutes. Check on it often, so it doesn’t burn!
- For a little extra protein, replace the the 1/3 cup pecans chopped to fine a powder with 3-4 tablespoons of your favorite unsweetened protein powder. I did this once and my kids couldn’t tell the difference.
- Occasionally the crisp can turn out a little watery, which mainly depends on your apples. I talked about my recommended varieties above, but even with the right variety, water content can vary. I’ve also found that using a too-small pan can cause extra liquid at the bottom. If you want the filling extra thick, add a tablespoon of tapioca flour to the apple slices before placing them in the pan.
Healthy Apple Crisp
My healthy apple crisp recipe has a tender apple cinnamon filling, an oat pecan topping, and no refined sugar. A warm, cozy fall dessert!
Ingredients
Tap underlined ingredients to see the ones I use.
Filling:
Topping:
Instructions
Tap on the times in the instructions to start a kitchen timer.
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Preheat the oven to 375 F degrees. Grease an 8×8-inch baking dish with butter or coconut oil, or spray with avocado oil spray.
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In a large bowl, combine the apples, maple syrup, lemon juice, and cinnamon (the part for the filling). Mix well, then transfer to the baking dish in an even layer.
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In a second large bowl, stir together the rolled oats, pecans (both coarsely chopped and the powdery ones), cinnamon (the part for the topping), and salt. Add the butter or coconut oil, and either mix with your hands or use a pastry cutter to combine. Mix in the maple syrup for the topping, if using.
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Crumble the topping over the apples.
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Bake for about 25 minutes, until the topping is golden brown and the apples are soft.
LAST STEP: Leave a rating to help other readers, or tag me @wholesomeyum on Instagram. I’d love to hear from you!
Maya’s Recipe Notes
Serving size: 1/8 of the entire pan
- Tips: Check out my recipe tips above to help you get the perfect texture and sweetness, and avoid common issues.
- Storage: Keep leftovers in an airtight container in the refrigerator for up to 3-4 days. I make this crisp in this baking dish that comes with a lid, so I just cover it and pop it in the fridge. Transferring this dessert is not ideal because the apples mix with the topping easily.
- Meal prep: This healthy apple crisp tastes best made fresh. However, I’ve cut the apples in advance before and stored them in the fridge with a little lemon juice. They did still brown a little, but not as much as without lemon juice. You can also mix the topping ahead.
- Reheat: Pop it back in the oven, or warm individual portions in the microwave. The topping will be softer than before, but still delicious.
- Freeze: Cool completely, then cover tightly and freeze for up to 3 months. Thaw in the refrigerator overnight before reheating.
- Note on nutrition info: I used my Wholesome Yum Zero Sugar Maple Syrup. If you use regular, the sugar and carbohydrates will be higher. The optional tablespoon is not included in the calculations.
I provide nutrition facts as a courtesy. Have questions about calculations or why you got a different result? Please see my nutrition policy.
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Healthy Apple Crisp

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8 Comments
kdehabermann
0Hi, What can I use instead of rolled oats? Thanks
Maya | Wholesome Yum
0Sorry, rolled oats are a main component of this recipe, so I don’t have a substitution for them here.
veronika
0My kids loved this apple crisp so much that when I make it, I always double the recipe. Ice cream on top makes the crisp the best sweet treat. Honeycrisp apples defiantly is the best choice for apples, they don’t get soggy or mushy.
Wholesome Yum D
0Veronika, that’s so sweet to hear! Totally agree on the Honey crisp apples too… they hold up so well and have just the right amount of sweetness. Ice cream on top? Perfect finishing touch.
Roz Slavik
0My husband loved this Healthy AppIe Crisp recipe so much that when I needed a dessert for a card game I was hosting I decided to make two! One for the girls and one for my husband! It was so easy to make and deliciously healthy!
Wholesome Yum D
0I’m so happy to hear that, Roz! It means a lot that it was such a hit with both your husband and your card game guests. Love that you made a separate one just for him, so sweet!
Ros
0Yummy
Maya | Wholesome Yum
0Thank you, Ros!