I’ve been on a kick to add more protein to baked goods for a few years now. These protein cookies are a fun twist on my flourless peanut butter cookies — I added protein powder, tossed in chocolate chips (because, why not?), adjusted the ratios, and added a sprinkle of sea salt. The result? Soft, chewy cookies that are like a blend of peanut butter and chocolate chip cookies — that you can feel good about. So next time you want an extra boost of protein in your treats (yes, really), make this protein cookie recipe with me!
Why You Need My Protein Cookie Recipe

- Hello, chocolate and peanut butter – These taste like a peanut butter cookie studded with melty chocolate chips. You’ll love the flavor and soft, chewy texture!
- Clean ingredients – Just 6 of them, plus salt! My protein chocolate chip cookies are naturally low carb and gluten-free, with no refined sugar or flour.
- Boost of protein – 8 grams of protein in each cookie! If you’re a fan of protein-packed baked goods like this, don’t miss my protein muffins, protein donuts, protein bars, protein brownies, and peanut butter protein balls, too.
- Quick and easy – You can enjoy these in just 20 minutes! I love them for a quick healthy snack, workout boost, or better-for-you dessert.


Ingredients & Substitutions
Here I explain the best ingredients for my peanut butter protein cookies, what each one does in the recipe, and substitution options. For measurements, see the recipe card.
- Peanut Butter – You’ll need the thick kind. I like this one with no sugar added. Another nut butter or even seed butter might work, but many of them are runny, so that would change the texture of your cookies.
- Protein Powder – This is how we get high protein cookies! I recommend whey protein powder for the best texture. Other protein powders, such as plant-based protein or egg white protein, might work (and would make this recipe dairy free), but I find they work differently than whey and could affect the end result. Let me know how it goes if you try a substitute!
- Sweetener – Besti Monk Fruit Allulose Blend is my go-to, because it’s 100% natural, tastes like sugar, and doesn’t dry out your protein cookies. If you like a brown sugar flavor, replace half of the regular Besti with Besti Brown instead. Other sweeteners will work, but many are more drying.
- Eggs – Flax eggs work, too.
- Chocolate Chips – Use your favorite. I love these sugar free ones! You can also swap them with raisins or dried cranberries.
- Vanilla Extract – I use this brand. Feel free to switch things up with other extracts, like almond extract or maple extract.
- Sea Salt – A little in the dough balances the sweetness, and I like a little flaky sea salt on top, but this is optional.
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How To Make Protein Cookies
I have step-by-step photos here to help you visualize the recipe. For full instructions with amounts and temperatures, see the recipe card.
- Mix the dry ingredients. In a large bowl, whisk together the protein powder, Besti, and sea salt, breaking up any lumps.
- Add the wet ingredients. Whisk in the eggs, then stir in the peanut butter and vanilla. Your protein cookie dough mixture should be smooth and thick, like a stiff peanut butter.
- Press the cookies. Use a medium cookie scoop to scoop the dough onto a parchment lined baking sheet, spacing 2 inches apart. Use a fork in a crisscross pattern to flatten into a cookie shape, about 1/4 inch thick.


- Add the chocolate chips. Dot them over the tops of the cookies and press in gently.
- Pop in the oven. Bake the protein cookies, until they are semi-firm and not sticky on top, but slightly underbaked. If you want the optional flaky sea salt, sprinkle it over them while they are warm. Gently transfer to cooling rack to firm up before enjoying!



My Recipe Tips
- I highly recommend a cookie scoop. This dough is sticky and difficult to form without one, plus a scoop ensures your protein cookies are all the same size and bake at the same rate. This scoop is my favorite! Pack the dough in before releasing.
- Why flatten the cookies with a fork? It’s about texture! I used to just flatten with the palm of my hand, and the texture is much better using the fork method – just like any other peanut butter cookies.
- If your fork sticks to the cookies when flattening, dip the tines in water between presses. Sometimes I need to do this and sometimes not.
- Chocolate chips go on top of the cookies, not mixed into the batter. I really wanted chocolate chip protein cookies, but when I tried mixing them in, they melted all over the pan. They stay intact quite well if they are on top, and you can still press them in a bit.
- If your cookies aren’t baking evenly, rotate the pan halfway through. And a good baking sheet makes all the difference—I have this sheet pan in every size for even baking!
- For best texture, underbake slightly. Overbaking can cause too much peanut butter oil to leak out, leaving the cookies dry. A little oil is normal, but if there’s a lot, they’ve been in the oven too long.
- Be careful transferring the cookies to the cooling rack. They are very fragile right out of the oven, so I use this cookie spatula to transfer them. Don’t use your hands, or they might break!

Protein Cookies (Easy Recipe)
My protein cookies are like a chewy peanut butter cookie with chocolate chips and a protein boost! Gluten free and no refined sugar.
Instructions
[ See step photos See my tips ]Tap on the times in the instructions to start a kitchen timer.
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Preheat the oven to 350 degrees F (177 degrees C). Line a large baking sheet with parchment paper.
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In a large bowl, whisk together the protein powder, sweetener, and sea salt, breaking up any lumps.
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Add the eggs and whisk at the edge of the bowl to mix the yolk and white. Add the peanut butter and vanilla, and stir until smooth and thick (the texture should be like a more stiff peanut butter).
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Scoop the cookie dough using a medium cookie scoop, and release balls of dough onto the lined baking sheet, spaced at least 2 inches apart. Use the tines of a fork to flatten the balls into cookies, first in one direction and then the opposite direction, to about 1/4 inch (~1/2 cm) thickness.
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Dot the chocolate chips over the tops of the cookies and press in gently. Try to avoid having the chocolate directly touching the parchment paper.
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Bake for 10-12 minutes, until the cookies are semi-firm and not sticky on top, but slightly underbaked.
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Sprinkle flaky sea salt over the cookies if you like (optional). Do this right away while they are hot, so that the salt sticks.
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Use a cookie spatula to carefully transfer the cookies to a cooling rack. Cool completely to firm up.
Did you make it? Leave a review or tag me @wholesomeyum on Instagram!
Maya’s Recipe Notes
Serving size: 1 protein cookie, about 2 1/4 inches in diameter
- Tips: Check out my recipe tips above to help you get evenly baked cookies with the right texture, avoid sticking or chocolate melting all over your pan, and prevent the cookies from falling apart.
- Store: Keep your protein cookies in an airtight container at room temperature for up to 3 days, or in the fridge for up to 2 weeks.
- Freeze: You can freeze the baked cookies, or just scoops of raw cookie dough (without chocolate chips). Thaw on the counter overnight before enjoying or baking.
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Protein Cookies

Gratitude Moment

I’ve been making these protein cookies since 2018, but every time I seem to change a little something (lol).
This last time, I really feel like I’ve nailed it. I switched to whey protein powder (I used to use bone broth protein and admit the taste was a little odd), added the fork pattern, adjusted the ratios, and changed how I add the chocolate chips (add on top instead of fold).
And last but certainly not least, I switched to Besti for the sweetener! These cookies used to turn out significantly more dry when I used to make them with other sugar alternatives. Besti makes them more moist and chewy. Give them a try and let me know what you think!
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118 Comments
Denise Foster
0I used Powdered Peanut Butter for the protein powder, pure allulose (a little more than recipe as it isn’t as sweet as some), and commercial super chunk peanut butter (can you tell I like peanut butter??). I kind of fiddled with the amount of peanut butter until I got a scoopable dough. I love them.
Lanie
0Nice, looks yummy. Can I substitute the Besti white sugar for the brown sugars? If so would it be a one to one ratio?
Maya | Wholesome Yum
0Hi Lanie, In theory you can and they are 1:1 in terms of sweetness. However, Besti Brown is more moist, so aside from the flavor, the texture might turn out a little different. Let me know how it goes if you try!
Maya | Wholesome Yum
0Thank you for sharing, Denise! I’m glad that worked well for you.
Sonny
0Hi Maya, can the peanut butter be omitted to have a protein sugar cookie? Thank you 😊
Maya | Wholesome Yum
0Hi Sonny, Sorry, the peanut butter is a main part of this recipe so unfortunately you can’t really make these without it. You could try almond butter for a flavor that isn’t as strong. I’ll add a protein sugar cookie recipe to my list to experiment with in the future!
OmaKK
0I only left 4⭐️ because I like they are healthier, but he’s wanting soft center PB cookies. Is there a hack to make them soft center, crispy outside and edges?
Maya | Wholesome Yum
0Yes, the baking time is the key and it can vary depending on the thickness you make them, your baking sheet material, your oven, etc. I would just bake them for a bit less time next time to get that soft center!
Debbie Brozanic
0Do you have a brand of whey protein powder that you recommend for baking these cookies? Thanks
Maya | Wholesome Yum
0Hi Debbie, Yes, I use this brand.
Debbie Brozanic
0Good to know! Thank you!
Doreen
0Just made a batch and they are fantastic! Thank you for providing delicious, easy recipes! Everything I've tried has been delicious and even friends not following keto love them! Having just one cookie after dinner at night seems to curb any negative thoughts about what I "can't" have!!
Maya | Wholesome Yum
0I’m glad you liked these, Doreen, and that your friends do, too. Thank you so much!
Karyn
0Thanks for the great start for my New Year. I have been on keto for about two years and attained my goal weight. For me, it is a lifestyle, not just a dietary quick fix.
I was inpressed with your site. You have accomplished much in organizing the info, keeping it simple and delicious, and having pictures that show the finished product. You do much more than these three things AND IT SHOWS!
Good work… on many levels! Kudos! I am looking forward to your emails and updates. This is SPOT ON!
I will be using your recipes for our Superbowl fun. I can tell by the ingredients used, I am going to live it. I will rate all of the ones used for your site. Thanks! Awesome jo!
Maya | Wholesome Yum
0Happy upcoming new year, Karyn! I’m so glad my site and recipes have been helpful for you, that means a lot. It also means a lot that you’d come back and rate the recipes you make — thank you!
Barbra
0The recipe looks amazing! I am searching for a keto pie (without dairy, sweetened with monk fruit or allulose) with chocolate chip cookie flavor/filling.
Maya | Wholesome Yum
0Thank you, Barbra! Sorry, I don’t have a chocolate chip cookie pie yet, I’ll add it to my list.
Nancy Gordon
0You are using a collagen protein, have you tried, or do you have an opinion on using Prime Equip protein powder? Would this change your cookie consistency or taste? thanks
Denise Foster
0I used powdered peanut butter for the whey protein, and pure allulose for the sweetener. I also used a commercial chunky peanut butter. (They were what I had on hand). For me, they turned out great!
Miriam
0Nancy did it work with the equip protein powder?
Maya | Wholesome Yum
0Hi Nancy, I’ve tried Prime Equip protein powder and like it, but have not used it for this particular recipe. Let me know how it goes if you try it!
karlah
0I love these cookies! Takes care of my sweet tooth! I do add 1/2 tsp baking soda.
Jasmine
0Yummmyyy! I just baked these and used regular vanilla protein powder instead of bone broth and they turned out delicious! Baked perfectly at 12 minutes, soft and chewy texture. My serving came out to be 18 cookies so maybe a little smaller than recipe says. Will be sharing with friends and making again!
AR
0You usually say to use a food processor, but could a stand up mixer work instead?
Kate
0Yummy! Did not use chocolate chips, instead crushed peanuts! It doesn’t affect my blood sugar so real keto! Thank you! Also subbed pea protein vanilla flavor and did not add vanilla. I used a stand up mixer also.
Maya | Wholesome Yum
0This recipe doesn’t need any kind of mixer or processor. 🙂 Just a bowl works fine. You can use a mixer if you like, though.
Li
0Can I use whey or pea protein powder instead?
Kate
0I used it, it works
Maya | Wholesome Yum
0Hi Li, Yes, whey is what I use! I haven’t tried it with pea protein powder.
William
0Fantastic … mcgorkle great helpful.. practical! Keep up the excellent work!!!?????
Laura Van Bellinger
0Can you use regular protein vs bone broth?
Maya | Wholesome Yum
0Hi Laura, I recommend whey protein powder for this recipe. Other protein powders might work, but will change the texture a bit.
Marie
0Why are there two very different photos for this recipe? The one I find pinned on Pinterest is light and the one on the actual recipe page is very dark. I like the looks of the other one, where I can I find that recipe?
Maya | Wholesome Yum
0Hi Marie, Sometimes I update recipes on my site with new pictures, that is why you may see 2 different pictures. It’s pretty much the same recipe but I’ve tweaked it a little to improve it.
Lydia
0I love peanut butter chocolate chip cookies. And a recipe for them that’s healthy too? What’s not to love!
Katie
0I love that these are easy and also healthier for you. Such a great treat for everyone!
Kristyn
0The peanut butter adds a creaminess that is so good! I will be making these more often. I am always looking for a healthier cookie!
Toni
0This is so good!! Really perfect cookies!
Natalie
0I like the carb count!! They are so soft & chewy, which makes for the best cookie!!