Before I went low carb and gluten-free, blueberry muffins were my go-to treat from the bakery or coffee shop—I even used to convince myself they were healthy just because of the blueberries, haha! When I started actually eating healthier, I created these keto blueberry muffins with almond flour back in 2017, as a tribute to the ones I used to enjoy. And honestly, I love them even more. Of all my (many, many) almond flour recipes, they’re in my top 5. Make these keto muffins with me and I bet they’ll be in your top 5, too!
Why You Need My Keto Blueberry Muffin Recipe

- The best texture and flavor – Unlike many keto muffin recipes that can be dry, grainy, or have an aftertaste, my almond flour blueberry muffins are moist, tender, and the sweetness tastes like sugar. You’ll notice vanilla, a hint of almond flavor, and juicy berries in every bite. All the bakery vibes!
- Fast, easy, and meal prep friendly – This is a one-bowl, 30-minute recipe, so you can find time for it even with a busy schedule like mine. But they also store and freeze well, so I make them ahead most often for a keto breakfast on the go.
- Clean, low carb ingredients – Each muffin has just 3 grams net carbs, so naturally they’re perfect for a keto diet. But they’re also gluten-free and have a dairy-free option.
- Many ways to enjoy them – Enjoy them with a keto coffee for breakfast, with my low carb breakfast casserole or bacon in the oven for brunch, or simply as a little treat whenever a craving strikes.
- One of my most popular recipes – Over the years, my keto blueberry muffins have received over 1000 5-star reviews (thank you!). I even included them in my Easy Keto Cookbook, along with other popular faves like keto cheesecake.


Ingredients & Substitutions
Here I explain the best ingredients for my keto muffin recipe, what each one does, and substitution options. For measurements, see the recipe card.
Almond Flour:
The flour you use makes a huge difference! I highly recommend using Wholesome Yum Blanched Almond Flour, which is super fine for a delicate crumb in your keto muffins. Many brands are too coarse (even if they say blanched) and almond meal is even worse, leaving a gritty texture.
Can you use other flours?
Almond flour works best, but you can use sunflower seed meal if you need a nut-free alternative. (Your muffins might turn green due to a reaction with the baking powder, but they’re fine to eat.)
Sorry, coconut flour will not work in this recipe, but you can make my coconut flour blueberry muffins instead if that’s what you want to use.
Besti Sweetener:
Before I knew about allulose, I used erythritol for these keto blueberry muffins, but trust me when I say it’s not the best choice. Besti Monk Fruit Allulose Blend will get you the super moist texture you see here, because it naturally locks in moisture and doesn’t crystallize — or have that erythritol cooling effect. It’s the only sugar substitute I use now.
Can you use a different sweetener?
Yes, but it’ll affect the texture. Here’s a rundown of what does and doesn’t work:
- Other monk fruit or stevia blends – Such as Swerve, Lakanto, or Truvia. All of these actually use erythritol as the primary ingredient. They’ll work (check my sweetener conversion chart), but have the same issues as erythritol: more dry and can crystallize.
- Pure allulose – Wholesome Yum Allulose works great, but you’ll need more of it (about 2/3 cup).
- Powdered sweeteners – These work fine, but the muffin texture isn’t as nice. How well they work will depend on the blend — Besti Powdered will be the closest, whereas blends I mentioned above in powdered form will give you more dry results.
- Concentrated sweeteners – Like pure monk fruit or pure stevia (the kind that you add in drops or teaspoons, not cups). I don’t recommend these for this recipe because your batter will be too wet.
- Liquid sweeteners – Not a good choice either. Again, your batter will be too wet. You can make my other almond flour muffins with liquid sweeteners, though.
- Coconut sugar – This works fine and would be paleo, but they won’t be keto muffins anymore.
Other Ingredients:
- Butter Or Coconut Oil – I originally made these with coconut oil (the dairy-free option), but now prefer them with unsalted butter (this brand). Either works! If using butter, the easiest way to measure 1/3 cup is to cut 5 tablespoons from the stick and then about 1/3 of the 6th tablespoon.
- Unsweetened Almond Milk – Prevents your low carb muffins from being too dense. You can use any keto milk option here, such as coconut milk beverage (the liquid kind in a carton, not the thick kind in a can), hemp milk, or watered down heavy cream. I use my homemade almond milk when I have it. Regular dairy milk will work from a recipe standpoint, but will increase the carbs, since lactose is sugar.
- Eggs – Flax eggs or another egg substitute should work, too.
- Baking Powder – I like this brand, which is non-GMO. Be sure you use baking powder, not baking soda — they are not the same.
- Fresh Blueberries – You can make these keto blueberry muffins using frozen blueberries too, but to avoid a soggy texture, don’t thaw them first. I also toss frozen ones in a little extra almond flour to reduce blue streaks.
- Vanilla Extract – You can also add other extracts (see my variations below).
- Sea Salt
Free Printable: Low Carb & Keto Food List
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How To Make Keto Muffins
I have step-by-step photos here to help you visualize the recipe. For full instructions with amounts and temperatures, see the recipe card.
- Mix the dry ingredients. In a large bowl, whisk together the almond flour, Besti, baking powder, and a pinch of sea salt. (A whisk breaks up any lumps.)
- Add the wet ingredients. Stir in the melted butter or coconut oil, almond milk, eggs, and vanilla, then fold in the blueberries.


- Scoop the batter into a lined muffin tin. This is my favorite pan, because it doesn’t get the muffins too dark and cleans up so easily if I get batter outside the liners. I use these parchment liners, but silicone liners work well, too.
- Bake until golden. Pop your keto blueberry muffins in the oven and bake until a toothpick comes out clean. They’ll feel very soft, but will firm up as they cool on a rack.



My Recipe Tips
- Use quality ingredients. I can’t emphasize this enough! This almond flour and this sweetener will get you the best texture.
- Make sure your eggs and almond milk are at room temperature. If you add them cold, your butter or coconut oil can solidify and you won’t get a smooth batter.
- Expect a thick batter. These keto blueberry muffins have a thicker batter than conventional white flour recipes, so don’t be surprised.
- Fold in the blueberries gently. Especially if they’re frozen. You don’t want to smash them!
- You can make 10 or 12 muffins depending on your priorities. I usually make 10 as pictured here to get taller muffin tops, but you can make 12 for fewer calories and carbs per muffin.
- Save extra berries for the tops. If you want blueberries dotting the tops like mine, add some extras on top right before baking.
- Cool slightly before enjoying. It’s hard to resist a warm, freshly baked muffin, but wait at least 10-15 minutes. The texture of these almond flour blueberry muffins improves as they cool.
- Want mini muffins or a loaf? For minis, use a mini muffin tin (this is my favorite) — you’ll get 20-24 little muffins — and reduce baking time to about 15 minutes. For a loaf, my keto blueberry bread is based on this recipe, in loaf form, or try my keto zucchini bread (it has blueberries).

Flavor Variations
These low carb blueberry muffins are my favorite flavor, but it’s also the perfect base recipe for add-ins! Here are some variations I’ve made:
- Berries – Try chopped strawberries, raspberries, or blackberries instead of blueberries. Smaller pieces work best for even baking.
- Extracts – Almond, maple, or even banana extract can totally change the vibe. (I love banana for keto banana muffins!)
- Citrus – A little lemon zest or even orange zest is the perfect match for blueberries! You can also use up to a tablespoon of lemon juice instead for a milder flavor.
- Nuts – Walnuts, pecans, or your favorite keto nuts add a great crunch.
- Chocolate chips – Add sugar-free chocolate chips, like I do for keto chocolate chip muffins.
- Streusel topping – I do this when I want to make my keto blueberry muffins a little fancy! Mix an extra 1/2 cup of almond flour with a tablespoon of melted butter, 1-2 tablespoons of Besti, and 1/4 teaspoon of vanilla, until crumbly. Sprinkle over the muffins before baking.
More Keto Muffin Recipes
Let’s just say I love muffins. 😉 Try some of my other reader favorites next:

Keto Blueberry Muffins (Almond Flour)
These low carb, keto blueberry muffins with almond flour are ultra moist, sweet and fluffy, with just 3g net carbs. Easy to make in one bowl!
Instructions
[ See step photos See my tips ]Tap on the times in the instructions to start a kitchen timer.
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Preheat the oven to 350 degrees F (177 degrees C). Line a muffin pan with 10 or 12 silicone or parchment paper muffin liners. (Use 12 for lower calories/carbs, or 10 for larger muffin tops.)
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In a large bowl, stir together the almond flour, Besti, baking powder and sea salt.
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Mix in the melted butter or coconut oil, almond milk, eggs, and vanilla extract. Fold in the blueberries.
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Distribute the batter evenly among the muffin cups. Bake for 20-25 minutes, until the tops are golden and an inserted toothpick comes out clean.
Did you make it? Leave a review or tag me @wholesomeyum on Instagram!
Maya’s Recipe Notes
Serving size: 1 muffin
- Tips: Check out my recipe tips above to help you get the best texture in your muffins, get tall muffin tops or fewer carbs, and for the nicest presentation. I also have an option to make mini muffins or a loaf.
- Variations: See this section above for different add-ins.
- Store: The almond flour blueberry muffins are fine on the counter for a couple of days, but beyond that, store them in the fridge for up to a week, wrapped in parchment paper or in an airtight container. Avoid plastic wrap, which will make them soggy.
- Reheat: Spread a little butter or coconut oil on top to keep them moist, and warm in the oven or microwave.
- Freeze: These muffins freeze beautifully and last 4-6 months in the freezer! Thaw in the fridge or on the counter.
📖 Want more recipes like this? Find this one and many more in my Easy Keto Cookbook!
I provide nutrition facts as a courtesy. Have questions about calculations or why you got a different result? Please see my nutrition policy.
Add Your Notes Your Notes
© Copyright Maya Krampf for Wholesome Yum. Please DO NOT SCREENSHOT OR COPY/PASTE recipes to social media or websites. We’d LOVE for you to share a link with photo instead.
Keto Blueberry Muffins

Gratitude Moment

I’ve lost count of how many times I’ve made this low carb muffin recipe. I almost always have a batch in my freezer!
Another reason I love them is it’s a super easy recipe for my kids to help with. I just have to watch the measuring, lol! One of them loves these muffins, and the other… well, she hates nuts, so it’s a work in progress. 😉 I’m grateful for the time spent baking with them regardless — and for the big batch in my freezer at all times.
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2,093 Comments
Sandy
0I made these for a retirement celebration at the gym. Some people are gluten free while others are watching sugar. Everyone loved them! I added a bit of flaxseed and a good bit of cinnamon. Super moist and really yummy.
Wholesome Yum D
0So glad to hear they were a hit, Sandy! I love that you found a way to make them work for everyone. What a sweet way to celebrate!
Maria
0I make these regularly, my husband and I love them. I freeze any leftovers and just reheat in the microwave. Thanks, Maya for all your hard work.
Wholesome Yum D
0I love hearing that, Maria! So glad these are a regular favorite for you and your husband and great tip on freezing the leftovers. Thank you for the kind words!
Cathi Turnbull
0These are amazing, I am a diabetic and make this every week for snacks and to take to work for lunch. They don’t spike my sugar. I even experiment with adding different extracts to mix up the flavor. One time I made a cinnamon crumb topping to put on top, and it was so good.
Maya | Wholesome Yum
0That’s wonderful, Cathi! I’m glad these muffins make your work lunch easier. A cinnamon crumb topping is great on them, too!
Kathleen Holik
0I have made these delicious Blueberry Muffins a bunch of times. I always add just a blueberry or two after spooning the batter into the pan in each muffin. They are so good. I can’t wait to try using a different fruit like strawberries, raspberries or blackberries. I might even try a mixture of different berries. They are also great when you warm them in the oven or microwave.
Wholesome Yum D
0I’m so glad you’re loving the blueberry muffins, Kathleen! Adding an extra berry on top is such a nice touch, and I love the idea of trying a berry mix next, that sounds delicious. Warming them up is the best too… like fresh-baked all over again!
Kathleen Holik
0I am gonna have to try that blueberry topping (from the cheesecake) on top of them too. And thanks so much for all your tips.
Maya | Wholesome Yum
0Great idea, Kathleen! Just keep in mind it can make the muffins soggy if left on top of them, so I recommend putting on the topping right before eating. Enjoy!
Suzanne Dailey Howard
0Made these today using your recipe, including your Besti sweetener, added 1/4 tsp. lemon extract, no other changes. My, oh my. I’m a muffin lover and now can enjoy these on my keto program without guilt. I’m in heaven. Do you have a lemon poppyseed version, too?
Maya | Wholesome Yum
0I’m so glad you liked them, Suzanne! Thanks for sharing. I don’t have a separate lemon poppy seed version, but you can add a tablespoon of poppy seeds and some extra lemon zest and/or lemon juice. I also have this lemon poppy seed bundt cake you might like.
donna70.dk
0Wonderful muffins!!!! Easy and flavor. How should I store them?
Maya | Wholesome Yum
0Thank you so much, Donna! I have storage instructions listed above. They’re ok on the counter for a day or two, beyond that in the fridge or freezer.
Eunah
0It turned out great! It’s yummier than the other keto desserts I’ve made so far. Thank you for this recipe!
Wholesome Yum D
0I’m so happy to hear that, Eunah! I’m so happy to hear it turned out well and that it’s your favorite keto dessert so far. That means a lot!
Jackie
0These are super tasty! I followed the recipe exactly and was able to get 12 muffins. They were moist and flavorful. I will definitely be making them again.
Wholesome Yum D
0I’m so glad you liked them, Jackie! Moist, flavorful, and easy to make sounds like a win all around!
talk2sarahk
0The best recipe I have found for moist fluffy muffins I was skeptical but wow amazing. Thank you.
Wholesome Yum D
0I’m so glad you gave it a try and loved the muffins! Thank you for the kind words.
Crystal
0Should I rest the batter? Have you ever tried it with this recipe? I usually rest my batters 30mins before baking and it seems to help with rise, but jury’s out on that one. In resting 15mins right now but not sure if you would recommend that. Also why no xanthan gum? Are they not crumbly? Have you tried adding it to see if it would help? Another question, how long to mix? I normally use my stand mixer but with this recipe I just whisked until it came together. Have you tried different mixing methods? Should I go for shorter or longer mix? It’s gluten free so I know toughening shouldn’t be an issue. Thank you so much if you ready this!!
Maya | Wholesome Yum
0Hi Crystal, No, I don’t recommend resting the batter because the baking powder will react and lose its effectiveness. I only add xanthan gum to recipes when I feel it’s very necessary, and don’t mind muffins being a little crumbly, but you can add a little bit if you like. I usually just whisk this recipe by hand as it’s easiest and there is no reason to use a hand mixer. Hope this helps!
Gayle Kliemann
0Can I use 1/2 cup protein powder in place of 1/2 cup almond flour to lighten the muffins?
Maya | Wholesome Yum
0Hi Gayle, Yes, that’s a great idea! The texture will be a bit different but it should work. If your protein powder is very absorbent and the batter seems dry, you can add an extra splash of milk. See my pictures or video above for reference on batter consistency. Please let me know how they turn out!
Vanessa
0This is my go-to blueberry muffin recipe. My kids enjoy them so much they request them. I didn’t have almond milk, so I used 1 tbsp of heavy cream and 2 tbsp of water. Turned out a little dense but still delicious!
Wholesome Yum D
0That’s wonderful, Vanessa! Even with the swap, I love that they still turned out tasty and kid-approved.
J
0I made these. While the flavor was really good, these came out very soggy, like not sure exactly why.
Maya | Wholesome Yum
0Sorry to hear that! It sounds like you left them in the muffin tin for too long. I recommend removing them once they’re cool enough to handle, and finishing cooling on a rack.
Kristin Wing
0I need to know sodium too. Is there a way to find out for the muffins?
Maya | Wholesome Yum
0Hi Kristin, Sodium will vary depending on brands of ingredients, so you’d have to add it up yourself based on what you have.
Kat Oswald
0BEST MUFFINS EVER! I added 20g of protein, a bit more vanilla, and lemon zest. The entire family LOVES them. Thank you for sharing this recipe! They’re perfect for breakfast or an afternoon snack. These are a game changer for our family and far exceeded all expectations!
Gayle Kliemann
0Did you add protein powder? Whey protein? Did you replace some of the almond flour or just add? Thanks.
Wholesome Yum D
0That means so much, Kat! I’m thrilled your whole family is enjoying them, and I’m honored they’ve become a go-to for you!
Lonna Johnson
0Made these for my Ladies’ Bible Study. They were a hit and when I told them they were keto, they didn’t believe me. So light, fluffy and full of blueberry goodness.
Wholesome Yum D
0That’s awesome, Lonna! I love that they were such a hit with your group and even better that no one could tell they were keto.
Elizabeth Mayme Line
0This recipe turned out great! The muffins came out very moist, the flavor is sweet but not too sweet.. and I love the way the blueberries turned the batter purple and blue around them 🙂
Wholesome Yum D
0Elizabeth, I’m so happy they turned out so well for you! The way the blueberries tint the batter purple and blue is one of my favorite parts, too and sweet-but-not-too-sweet sounds just right.
Patsy
0I make this recipe x2 in a large glass pan, & add extra blueberries.It freezes great. We eat it w/ yogurt for breakfast. It is delicious! Thank you!
Wholesome Yum D
0Patsy, that sounds delicious, especially with the extra blueberries! Love the idea of freezing it for an easy breakfast with yogurt.
Connie
0I love this recipe! I make it using blueberries, lemon zest and lemon juice. I also make it with chopped, pre cooked apples, pecans and cinnamon. Thank you!
Wholesome Yum D
0Connie, that sounds absolutely delicious, both the blueberry-lemon version and the apple-pecan one! I love how you’ve made it your own with those flavor twists.
Rosemarie Kelly
0These muffins put a new twist on blueberries! I never enjoy blueberries so much. A healthy muffin indeed!
Wholesome Yum D
0Rosemarie, I’m so happy you enjoyed them! I also love that they gave blueberries a whole new appeal for you! A healthy muffin that changes your mind about an ingredient is always a win.